PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00155725001
Common NameGSBRNA2T00155725001, LOC106364967
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 222aa    MW: 24170.6 Da    PI: 6.7411
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00155725001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.55.2e-39131131100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkCak+Cv+apyf++eq +++fa++hk+FGasn +kll++lp+++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +
  GSBRNA2T00155725001  13 PCGACKFLRRKCAKGCVFAPYFCHEQgASHFAAIHKVFGASNASKLLSQLPTSDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVN 102
                          7*************************89************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a+l+ lk++
  GSBRNA2T00155725001 103 LQAQLEILKQQ 113
                          *******9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.44112114IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3613111IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSSSSSSSVS GSPCGACKFL RRKCAKGCVF APYFCHEQGA SHFAAIHKVF GASNASKLLS  60
QLPTSDRCEA AITISYEAQA RLQDPIYGCV SHIFALQQQV VNLQAQLEIL KQQVAQSMTF  120
ADSPSSENPN SFYGDTTKTT SYHHDHQNIY HHHDQSHLVN QIGSLGTGQH GDATANSYPS  180
QNSSGFGEFS IYPELEQHLN AFNQDHLKEL QSANFGYISF S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00155725001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738490.0AB473849.1 Arabidopsis thaliana ASL16 mRNA for ASYMMETRIC LEAVES2-like 16 protein, complete cds.
GenBankAF4478930.0AF447893.1 Arabidopsis thaliana LOB DOMAIN 29 (LBD29) mRNA, complete cds.
GenBankBT0252820.0BT025282.1 Arabidopsis thaliana At3g58190 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659892.11e-163PREDICTED: LOB domain-containing protein 29
SwissprotQ9M2J71e-136LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A078C4V41e-163A0A078C4V4_BRANA; BnaC08g29120D protein
STRINGBra007385.1-P1e-146(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-111lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]